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{{Short description|Family of bacteria}} |
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{{Automatic_taxobox |
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{{Taxobox |
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| grandparent_authority = Munoz ''et al''. 2017<ref name="Munoz1">{{cite journal |vauthors=Munoz R, Rossello-Mora R, Amann R | title = Revised phylogeny of ''Bacteroidetes'' and proposal of sixteen new taxa and two new combinations including ''Rhodothermaeota'' phyl. nov. | journal = Syst Appl Microbiol | year = 2016 | volume = 39 | issue = 5 | pages = 281–296| doi = 10.1016/j.syapm.2016.04.004 | pmid = 27287844 }}</ref> |
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| image = |
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| parent_authority = Munoz ''et al''. 2017<ref name="Munoz2">{{cite journal |vauthors=Munoz R, Rossello-Mora R, Amann R | title = Corrigendum to "Revised phylogeny of ''Bacteroidetes'' and proposal of sixteen new taxa and two new combinations including ''Rhodothermaeota'' phyl. nov." [''Syst. Appl. Microbiol''. '''39 (5)''' (2016) 281–296] | journal = Syst Appl Microbiol | year = 2016 | volume = 39 | issue = 7 | pages = 491–492| doi = 10.1016/j.syapm.2016.08.006 | pmid = 27639921 }}</ref> |
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| image_caption = |
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| taxon = Chitinophagaceae |
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| regnum = [[Bacteria]] |
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| authority = Kämpfer ''et al''. 2011<ref>{{cite journal |vauthors=Kämpfer P, Lodders N, Falsen E | title = ''Hydrotalea flava'' gen. nov., sp. nov., a new member of the phylum ''Bacteroidetes'' and allocation of the genera ''Chitinophaga'', ''Sediminibacterium'', ''Lacibacter'', ''Flavihumibacter'', ''Flavisolibacter'', ''Niabella'', ''Niastella'', ''Segetibacter'', ''Parasegetibacter'', ''Terrimonas'', ''Ferruginibacter'', ''Filimonas'' and ''Hydrotalea'' to the family ''Chitinophagaceae'' fam. nov. | journal = Int J Syst Evol Microbiol | year = 2011 | volume = 61 | issue = Pt 3 | pages = 518–523| doi = 10.1099/ijs.0.023002-0 | pmid = 20382796 | doi-access = free }}</ref> |
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| phylum = [[Bacteroidetes (phylum)|Bacteroidetes]] |
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| classis = [[Chitinophagia]] |
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| ordo = [[Chitinophagales]] |
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| familia = '''Chitinophagaceae''' |
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| familia_authority =Kämpfer et al. 2011<ref name=Chitinophagaceae>{{cite journal |title=Chitinophagaceae |journal=www.bacterio.net |url=http://www.bacterio.net/chitinophagaceae.html}}</ref> |
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| subdivision_ranks = Genera |
| subdivision_ranks = Genera |
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| subdivision_ref = <ref name="LPSN">{{cite web |vauthors=Euzéby JP, Parte AC | url = https://lpsn.dsmz.de/order/chitinophagales | title = ''Chitinophagales'' | access-date = June 25, 2021 | publisher = [[List of Prokaryotic names with Standing in Nomenclature]] (LPSN)}}</ref><ref name=NfL>{{cite journal |last1=Parker |first1=Charles Thomas |last2=Taylor |first2=Dorothea |last3=Garrity |first3=George M |editor1-first=Charles Thomas |editor1-last=Parker |editor2-first=George M |editor2-last=Garrity |title=Taxonomic Abstract for the families. |date=8 October 2009 |doi=10.1601/tx.14400 |publisher=NamesforLife, LLC |doi-broken-date=2024-04-17 |language=en}}</ref> |
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| subdivision = |
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| subdivision = See text |
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''[[Arachidicoccus]]''<ref name=NfL>{{cite journal |last1=Parker |first1=Charles Thomas |last2=Taylor |first2=Dorothea |last3=Garrity |first3=George M |title=Taxonomic Abstract for the families. |date=8 October 2009 |doi=10.1601/tx.14400 |publisher=NamesforLife, LLC |language=en}}</ref><br> |
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''[[Arvibacter]]''<ref name=NfL/><br> |
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''[[Asinibacterium]]''<ref name=NfL/><br> |
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''[[Aurantisolimonas]]''<ref name=NfL/><br> |
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''[[Chitinophaga]]''<ref name=NfL/><br> |
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''[[Cnuella]]''<ref name=NfL/><br> |
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''[[Compostibacter]]''<ref name=NfL/><br> |
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''[[Crenotalea]]''<ref name=NfL/><br> |
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''[[Dinghuibacter]]''<ref name=NfL/><br> |
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''[[Edaphobaculum]]''<ref name=NfL/><br> |
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''[[Ferruginibacter]]''<ref name=NfL/><br> |
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''[[Filimonas]]''<ref name=NfL/><br> |
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''[[Flaviaesturariibacter]]''<ref name=NfL/><br> |
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''[[Flavihumibacter]]''<ref name=NfL/><br> |
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''[[Flavipsychrobacter]]''<ref name=NfL/><br> |
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''[[Flavisolibacter]]''<ref name=NfL/><br> |
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''[[Flavitalea]]''<ref name=NfL/><br> |
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''[[Gynurincola]]<ref name=NfL/><br> |
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''[[Haoranjiania]]''<ref name=NfL/><br> |
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''[[Heliimonas]]''<ref name=NfL/><br> |
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''[[Hydrobacter]]''<ref name=NfL/><br> |
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''[[Hydrotalea]]''<ref name=NfL/><br> |
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''[[Lacibacter]]''<ref name=NfL/><br> |
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''[[Nemorincola]]''<ref name=NfL/><br> |
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''[[Niabella]]''<ref name=NfL/><br> |
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''[[Niastella]]''<ref name=NfL/><br> |
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''[[Niveitalea]]''<ref name=NfL/><br> |
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''[[Panacibacter]]''<ref name=NfL/><br> |
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''[[Parafilimonas]]''<ref name=NfL/><br> |
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''[[Parasediminibacterium]]''<ref name=NfL/><br> |
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''[[Parasegetibacter]]''<ref name=NfL/><br> |
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''[[Pseudobacter]]''<ref name=NfL/><br> |
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''[[Pseudoflavitalea]]''<ref name=NfL/><br> |
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''[[Puia (bacteria)|Puia]]''<ref name=NfL/><br> |
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''[[Rurimicrobium]]''<ref name=NfL/><br> |
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''[[Sediminibacterium]]''<ref name=NfL/><br> |
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''[[Segetibacter]]''<ref name=NfL/><br> |
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''[[Solibius]]''<ref name=NfL/><br> |
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''[[Taibaiella]]''<ref name=NfL/><br> |
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''[[Terrimonas]]''<ref name=NfL/><br> |
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''[[Thermoflavifilum]]''<ref name=NfL/><br> |
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''[[Vibrionimonas]]''<ref name=NfL/><br> |
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| synonyms = |
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}} |
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'''Chitinophagaceae''' is an [[Aerobic organism|aerobic]] or [[ |
'''Chitinophagaceae''' is an [[Aerobic organism|aerobic]] or [[facultatively anaerobic]] and [[rod-shaped]] [[family (biology)|family]] of bacteria in the phylum [[Bacteroidota]].<ref name="LPSN"/><ref name=NfL/><ref>{{cite journal |title=''Chitinophagaceae'' |website=www.uniprot.org |url=https://www.uniprot.org/taxonomy/563835}}</ref><ref>{{cite book |last1=Krieg |first1=Noel R. |last2=Ludwig |first2=Wolfgang |last3=Whitman |first3=William B. |last4=Hedlund |first4=Brian P. |last5=Paster |first5=Bruce J. |last6=Staley |first6=James T. |last7=Ward |first7=Naomi |last8=Brown |first8=Daniel |title=''Bergey's Manual of Systematic Bacteriology: Volume 4: The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes'' |date=2011 |publisher=Springer Science & Business Media |isbn=9780387685724 |language=en}}</ref><ref>{{cite book |last1=Ralebitso-Senior |first1=T. Komang |title=Forensic Ecogenomics: The Application of Microbial Ecology Analyses in Forensic Contexts |date=2018 |publisher=Academic Press |isbn=9780128096093 |language=en}}</ref> |
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==Genera== |
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{{div col|colwidth=250px}} |
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* ''[[Agriterribacter]]'' <small>Lee and Whang 2020</small> |
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* ''[[Arachidicoccus]]'' <small>Madhaiyan ''et al''. 2015</small> |
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* ''[[Arvibacter]]'' <small>Chaudhary and Kim 2016</small> |
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<!-- Asinibacterium was reclassified as Sediminibacterium. --> |
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* ''[[Aurantisolimonas]]'' <small>Liu ''et al''. 2018</small> |
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* ''[[Chitinophaga]]'' <small>Sangkhobol and Skerman 1981</small> |
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* ''[[Cnuella]]'' <small>Zhao ''et al''. 2014</small> |
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* ''[[Compostibacter]]'' <small>Siddiqi ''et al''. 2016</small> |
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<!-- Crenotalea was reclassified as Thermoflavifilum. --> |
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* ''[[Deminuibacter]]'' <small>Wang ''et al''. 2019</small> |
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* ''[[Dinghuibacter]]'' <small>Lv ''et al''. 2016</small> |
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* ''[[Edaphobaculum]]'' <small>Cao ''et al''. 2017</small> |
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* "''Edaphocola''" <small>Choi ''et al''. 2019</small> |
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* ''[[Ferruginibacter]]'' <small>Lim ''et al''. 2009</small> |
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* ''[[Filimonas]]'' <small>Shiratori ''et al''. 2009</small> |
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* ''[[Flaviaesturariibacter]]'' <small>Kang ''et al''. 2015</small> |
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* ''[[Flavihumibacter]]'' <small>Zhang ''et al''. 2010</small> |
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* ''[[Flavipsychrobacter]]'' <small>Liu ''et al''. 2018</small> |
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* ''[[Flavisolibacter]]'' <small>Yoon and Im 2007</small> |
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* ''[[Flavitalea]]'' <small>Wang ''et al''. 2011</small> |
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* "''Foetidibacter''" <small>Pu ''et al''. 2021</small> |
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* "''Ginsengibacter''" <small>Siddiqi ''et al''. 2021</small> |
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* ''[[Gynurincola]]'' <small>Zhang ''et al''. 2019</small> |
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* ''[[Haoranjiania]]'' <small>Zhang ''et al''. 2016</small> |
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* ''[[Heliimonas]]'' <small>Leandro ''et al''. 2013</small> |
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* ''[[Hydrobacter]]'' <small>Eder ''et al''. 2015</small> |
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* ''[[Hydrotalea]]'' <small>Kämpfer ''et al''. 2011</small> |
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* "''Ilyomonas''" <small>Chhetri ''et al''. 2019</small> |
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* ''[[Lacibacter]]'' <small>Qu ''et al''. 2009</small> |
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* ''[[Mucibacter]]'' <small>Kim ''et al''. 2020</small> |
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<!-- Nemorella was renamed Nemorincola. --> |
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* ''[[Nemorincola]]'' <small>Chaudhary ''et al''. 2018</small> |
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* ''[[Niabella]]'' <small>Kim ''et al''. 2007</small> |
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* ''[[Niastella]]'' <small>Weon ''et al''. 2006</small> |
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* ''[[Niveitalea]]'' <small>Hyeon ''et al''. 2017</small> |
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* ''[[Panacibacter]]'' <small>Siddiqi ''et al''. 2016</small> |
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* ''[[Paracnuella]]'' <small>Wang ''et al''. 2019</small> |
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* ''[[Parafilimonas]]'' <small>Kim ''et al''. 2014</small> |
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* ''[[Paraflavitalea]]'' <small>Heo ''et al''. 2020</small> |
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* ''[[Parapseudoflavitalea]]'' <small>Lawson ''et al''. 2020</small> |
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* ''[[Parasediminibacterium]]'' <small>Kang ''et al''. 2016</small> |
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* ''[[Parasegetibacter]]'' <small>Zhang ''et al''. 2009</small> |
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* ''[[Phnomibacter]]'' <small>Siddiqi ''et al''. 2021</small> |
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* ''[[Pseudobacter]]'' <small>Siddiqi and Im 2016</small> |
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* "''Pseudocnuella''" <small>Maeng ''et al''. 2021</small> |
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* ''[[Pseudoflavitalea]]'' <small>Kim ''et al''. 2016</small> |
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* ''[[Puia (bacterium)|Puia]]'' <small>Lv ''et al''. 2017</small> |
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* ''[[Rurimicrobium]]'' <small>Dahal ''et al''. 2017</small> |
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* ''[[Sediminibacterium]]'' <small>Qu and Yuan 2008</small> |
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* ''[[Segetibacter]]'' <small>An ''et al''. 2007</small> |
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* "''Solibius''" <small>Kim ''et al''. 2010</small> |
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* ''[[Taibaiella]]'' <small>Zhang ''et al''. 2013</small> |
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* ''[[Terrimonas]]'' <small>Xie and Yokota 2006</small> |
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* ''[[Thermoflavifilum]]'' <small>Anders ''et al''. 2014</small> |
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<!-- Vibrionimonas was reclassified as Sediminibacterium. --> |
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{{div col end}} |
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==Phylogeny== |
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The currently accepted taxonomy is based on the [[List of Prokaryotic names with Standing in Nomenclature]]<ref name="LPSN"/> and the phylogeny is based on whole-genome sequences.<ref name="García-López">{{cite journal |vauthors = García-López M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Göker M | title = Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of ''Bacteroidetes'' | journal = Front Microbiol | year = 2019 | volume = 10 | pages = 2083 | pmid = 31608019 | pmc = 6767994 | doi = 10.3389/fmicb.2019.02083| doi-access = free }}</ref>{{efn|''Agriterribacter'', ''Arvibacter'', ''Aurantisolimonas'', ''Compostibacter'', ''Deminuibacter'', ''Dinghuibacter'', ''Edaphobaculum'', ''Ferruginibacter'', ''Flaviaesturariibacter'', ''Flavipsychrobacter'', ''Flavitalea'', ''Gynurincola'', ''Haoranjiania'', ''Heliimonas'', ''Lacibacter'', ''Mucibacter'', ''Nemorincola'', ''Niveitalea'', ''Panacibacter'', ''Paracnuella'', ''Paraflavitalea'', ''Parapseudoflavitalea'', ''Parasediminibacterium'', ''Parasegetibacter'', ''Phnomibacter'', ''Pseudobacter'', ''Pseudoflavitalea'', ''Puia'', and ''Rurimicrobium'' are not included in this phylogenetic tree.}} |
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{{Clade | style=font-size:75%;line-height:75% |
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|1={{clade |
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|label1='''''Chitinophagia''''' |
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|1={{clade |
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|1={{clade |
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|1=''[[Thermoflavifilum]]'' |
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|2=''[[Chitinophaga]]'' |
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}} |
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|2={{clade |
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|1=''[[Taibaiella]]'' |
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|2={{clade |
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|1=''[[Arachidicoccus]]'' |
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|2={{clade |
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|1={{clade |
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|1=''[[Segetibacter]]'' |
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|2={{clade |
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|1=''[[Parafilimonas]]'' |
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|2={{clade |
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|1=''[[Hydrotalea]]'' |
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|2={{clade |
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|1=''[[Filimonas]]'' |
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|2={{clade |
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|1=''[[Sediminibacterium]]'' |
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|2=''[[Hydrobacter]]'' |
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}} |
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}} |
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}} |
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}} |
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}} |
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|2={{clade |
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|1={{clade |
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|1=''[[Flavihumibacter]]'' |
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|2=''[[Niastella]]'' |
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}} |
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|2={{clade |
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|1={{clade |
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|1=''[[Cnuella]]'' |
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|2=''[[Flavisolibacter]]'' |
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}} |
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|2={{clade |
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|1=''[[Terrimonas]]'' |
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|2=''[[Niabella]]'' |
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}} |
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}} |
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}} |
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}} |
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}} |
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}} |
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}} |
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|label2=[[Outgroup (cladistics)|outgroup]] |
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|2=''[[Sphingobacteriia]]'' |
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}} |
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}} |
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==Notes== |
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{{notelist}} |
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==References== |
==References== |
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{{Reflist}} |
{{Reflist|2}} |
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{{Taxonbar| |
{{Taxonbar|from1=Q15794097|from2=Q26292257|from3=Q26292254}} |
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[[Category: |
[[Category:Bacteroidota]] |
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[[Category:Chitinophagia| ]] |
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Latest revision as of 15:02, 17 April 2024
Chitinophagaceae | |
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Scientific classification | |
Domain: | Bacteria |
Phylum: | Bacteroidota |
Class: | Chitinophagia Munoz et al. 2017[5] |
Order: | Chitinophagales Munoz et al. 2017[2] |
Family: | Chitinophagaceae Kämpfer et al. 2011[1] |
Genera[3][4] | |
See text |
Chitinophagaceae is an aerobic or facultatively anaerobic and rod-shaped family of bacteria in the phylum Bacteroidota.[3][4][6][7][8]
Genera
[edit]- Agriterribacter Lee and Whang 2020
- Arachidicoccus Madhaiyan et al. 2015
- Arvibacter Chaudhary and Kim 2016
- Aurantisolimonas Liu et al. 2018
- Chitinophaga Sangkhobol and Skerman 1981
- Cnuella Zhao et al. 2014
- Compostibacter Siddiqi et al. 2016
- Deminuibacter Wang et al. 2019
- Dinghuibacter Lv et al. 2016
- Edaphobaculum Cao et al. 2017
- "Edaphocola" Choi et al. 2019
- Ferruginibacter Lim et al. 2009
- Filimonas Shiratori et al. 2009
- Flaviaesturariibacter Kang et al. 2015
- Flavihumibacter Zhang et al. 2010
- Flavipsychrobacter Liu et al. 2018
- Flavisolibacter Yoon and Im 2007
- Flavitalea Wang et al. 2011
- "Foetidibacter" Pu et al. 2021
- "Ginsengibacter" Siddiqi et al. 2021
- Gynurincola Zhang et al. 2019
- Haoranjiania Zhang et al. 2016
- Heliimonas Leandro et al. 2013
- Hydrobacter Eder et al. 2015
- Hydrotalea Kämpfer et al. 2011
- "Ilyomonas" Chhetri et al. 2019
- Lacibacter Qu et al. 2009
- Mucibacter Kim et al. 2020
- Nemorincola Chaudhary et al. 2018
- Niabella Kim et al. 2007
- Niastella Weon et al. 2006
- Niveitalea Hyeon et al. 2017
- Panacibacter Siddiqi et al. 2016
- Paracnuella Wang et al. 2019
- Parafilimonas Kim et al. 2014
- Paraflavitalea Heo et al. 2020
- Parapseudoflavitalea Lawson et al. 2020
- Parasediminibacterium Kang et al. 2016
- Parasegetibacter Zhang et al. 2009
- Phnomibacter Siddiqi et al. 2021
- Pseudobacter Siddiqi and Im 2016
- "Pseudocnuella" Maeng et al. 2021
- Pseudoflavitalea Kim et al. 2016
- Puia Lv et al. 2017
- Rurimicrobium Dahal et al. 2017
- Sediminibacterium Qu and Yuan 2008
- Segetibacter An et al. 2007
- "Solibius" Kim et al. 2010
- Taibaiella Zhang et al. 2013
- Terrimonas Xie and Yokota 2006
- Thermoflavifilum Anders et al. 2014
Phylogeny
[edit]The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature[3] and the phylogeny is based on whole-genome sequences.[9][a]
Notes
[edit]- ^ Agriterribacter, Arvibacter, Aurantisolimonas, Compostibacter, Deminuibacter, Dinghuibacter, Edaphobaculum, Ferruginibacter, Flaviaesturariibacter, Flavipsychrobacter, Flavitalea, Gynurincola, Haoranjiania, Heliimonas, Lacibacter, Mucibacter, Nemorincola, Niveitalea, Panacibacter, Paracnuella, Paraflavitalea, Parapseudoflavitalea, Parasediminibacterium, Parasegetibacter, Phnomibacter, Pseudobacter, Pseudoflavitalea, Puia, and Rurimicrobium are not included in this phylogenetic tree.
References
[edit]- ^ Kämpfer P, Lodders N, Falsen E (2011). "Hydrotalea flava gen. nov., sp. nov., a new member of the phylum Bacteroidetes and allocation of the genera Chitinophaga, Sediminibacterium, Lacibacter, Flavihumibacter, Flavisolibacter, Niabella, Niastella, Segetibacter, Parasegetibacter, Terrimonas, Ferruginibacter, Filimonas and Hydrotalea to the family Chitinophagaceae fam. nov". Int J Syst Evol Microbiol. 61 (Pt 3): 518–523. doi:10.1099/ijs.0.023002-0. PMID 20382796.
- ^ Munoz R, Rossello-Mora R, Amann R (2016). "Corrigendum to "Revised phylogeny of Bacteroidetes and proposal of sixteen new taxa and two new combinations including Rhodothermaeota phyl. nov." [Syst. Appl. Microbiol. 39 (5) (2016) 281–296]". Syst Appl Microbiol. 39 (7): 491–492. doi:10.1016/j.syapm.2016.08.006. PMID 27639921.
- ^ a b c Euzéby JP, Parte AC. "Chitinophagales". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 25, 2021.
- ^ a b Parker, Charles Thomas; Taylor, Dorothea; Garrity, George M (8 October 2009). Parker, Charles Thomas; Garrity, George M (eds.). "Taxonomic Abstract for the families". NamesforLife, LLC. doi:10.1601/tx.14400 (inactive 2024-04-17).
{{cite journal}}
: Cite journal requires|journal=
(help)CS1 maint: DOI inactive as of April 2024 (link) - ^ Munoz R, Rossello-Mora R, Amann R (2016). "Revised phylogeny of Bacteroidetes and proposal of sixteen new taxa and two new combinations including Rhodothermaeota phyl. nov". Syst Appl Microbiol. 39 (5): 281–296. doi:10.1016/j.syapm.2016.04.004. PMID 27287844.
- ^ "Chitinophagaceae". www.uniprot.org.
- ^ Krieg, Noel R.; Ludwig, Wolfgang; Whitman, William B.; Hedlund, Brian P.; Paster, Bruce J.; Staley, James T.; Ward, Naomi; Brown, Daniel (2011). Bergey's Manual of Systematic Bacteriology: Volume 4: The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes. Springer Science & Business Media. ISBN 9780387685724.
- ^ Ralebitso-Senior, T. Komang (2018). Forensic Ecogenomics: The Application of Microbial Ecology Analyses in Forensic Contexts. Academic Press. ISBN 9780128096093.
- ^ García-López M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Göker M (2019). "Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes". Front Microbiol. 10: 2083. doi:10.3389/fmicb.2019.02083. PMC 6767994. PMID 31608019.